# Gen3-Client

HTAN files available through the NCI CRDC Cancer Data Service can be downloaded in the terminal using the gen3-client. The gen3-client provides an easy-to-use, command-line interface for uploading and downloading data files to and from a Gen3 data commons from the terminal or command prompt, respectively.

# Step-by-step guide

# Step 1: Install the Gen3-client

Follow the Gen3-client install instructions for your operating system.

# Step 2: Obtain and Configure API Credentials

Log in to the NCI Commons Framework at nci-crdc.datacommons.io.
Go to your profile settings, create a new API key, and download the credentials.json file.

# Step 3: Configure the gen3-client

Configure a profile for the gen3-client that points towards your credentials and the NCI CRDC endpoint.

gen3-client configure \
    --profile=<your-profile-name> \
    --cred=<path-to-your-credentials-json> \
    --apiendpoint=https://nci-crdc.datacommons.io

# Step 4: Select Files from the HTAN Data Portal

Cancer Data Services (CDS) has changed its name to General Commons (GC). The HTAN Portal will be updated soon to reflect this change.

Go to the HTAN Data Portal and filter the files based on your criteria (e.g., open access CDS files).
Select the files you want to download.

# Step 5: Use the Gen3 Client to Download Files

Select the "Download files" link and view the the gen client command for your selected files.
Copy the Gen3-client command and run it in your terminal. Update the profile name and download location as needed. The command should look like this:
```
gen3-client download-multiple \
    --profile=<your-profile-name> \
    --manifest=gen3_manifest.json \
    --download_path=<your-download-location>
```